1S3V Oxidoreductase date Jan 14, 2004
title Structure Determination Of Tetrahydroquinazoline Antifolates In Complex With Human And Pneumocystis Carinii Dihydrofolate Reductase: Correlations Of Enzyme Selectivity And Stereochemistry
authors V.Cody, J.R.Luft, W.Pangborn, A.Gangjee, S.F.Queener
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Ec: 1.5.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dhfr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.173 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.970 106.970 43.856 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4, TQD enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
related structures by homologous chain: 1MVT, 8DFR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of tetrahydroquinazoline antifolates in complex with human and Pneumocystis carinii dihydrofolate reductase: correlations between enzyme selectivity and stereochemistry., Cody V, Luft JR, Pangborn W, Gangjee A, Queener SF, Acta Crystallogr D Biol Crystallogr 2004 Apr;60(Pt 4):646-55. Epub 2004, Mar 23. PMID:15039552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1s3v.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1S3V
  • CSU: Contacts of Structural Units for 1S3V
  • Likely Quarternary Molecular Structure file(s) for 1S3V
  • Structure Factors (126 Kb)
  • Retrieve 1S3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S3V from S2C, [Save to disk]
  • Re-refined 1s3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S3V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S3V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s3va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s3v] [1s3v_A]
  • SWISS-PROT database: [P00374]
  • Domain organization of [DYR_HUMAN] by SWISSPFAM
  • Other resources with information on 1S3V
  • Community annotation for 1S3V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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