1S4X Cell Adhesion date Jan 19, 2004
title Nmr Structure Of The Integrin B3 Cytoplasmic Domain In Dpc M
authors O.Vinogradova, J.Vaynberg, X.Kong, T.A.Haas, E.F.Plow, J.Qin
compound source
Molecule: Integrin Beta-3
Chain: A
Fragment: Cytoplasmic Domain (Residues 742-788)
Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia, Cd61
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb3, Gp3a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMembrane-mediated structural transitions at the cytoplasmic face during integrin activation., Vinogradova O, Vaynberg J, Kong X, Haas TA, Plow EF, Qin J, Proc Natl Acad Sci U S A 2004 Mar 23;101(12):4094-9. Epub 2004 Mar 15. PMID:15024114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (1s4x.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1S4X
  • Retrieve 1S4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S4X from S2C, [Save to disk]
  • View 1S4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S4X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S4X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s4xa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s4x_A] [1s4x]
  • SWISS-PROT database: [P05106]
  • Domain organization of [ITB3_HUMAN] by SWISSPFAM
  • Domain found in 1S4X: [Integrin_b_cyt ] by SMART
  • Other resources with information on 1S4X
  • Community annotation for 1S4X at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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