1S50 Membrane Protein date Jan 19, 2004
title X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a) In With Glutamate At 1.65 A Resolution
authors M.L.Mayer
compound source
Molecule: Glutamate Receptor 6
Chain: A
Fragment: Glur6 Ligand Binding Core
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Glur6 Residues 398-513 And 636-775
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami B(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22 (Modified)
symmetry Space Group: P 61
R_factor 0.200 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.272 52.272 169.411 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand GLU enzyme
related structures by homologous chain: 1S7Y
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of the GluR5 and GluR6 Ligand Binding Cores: Molecular Mechanisms Underlying Kainate Receptor Selectivity., Mayer ML, Neuron 2005 Feb 17;45(4):539-52. PMID:15721240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1s50.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1S50
  • CSU: Contacts of Structural Units for 1S50
  • Likely Quarternary Molecular Structure file(s) for 1S50
  • Structure Factors (220 Kb)
  • Retrieve 1S50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S50 from S2C, [Save to disk]
  • Re-refined 1s50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S50
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S50, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s50_A] [1s50]
  • SWISS-PROT database: [P42260]
  • Belongs to the glutamate-gated ion channel (gic) family of neurotransmitter receptors according to TCDB.
  • Domain organization of [GRIK2_RAT] by SWISSPFAM
  • Domains found in 1S50: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
    • Other resources with information on 1S50
  • Community annotation for 1S50 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science