OCA Atlas for 1S6W

1S6W

Antibiotic

date

Jan 28, 2004

title

Solution Structure Of Hybrid White Striped Bass Hepcidin

authors

J.J.Babon, S.Singh, M.W.Pennington, R.S.Norton, M.E.Westerman

compound

source

Molecule: Hepcidin
Chain: A
Fragment: Hepcidin, Mature Form (Residues 65-85)
Engineered: Yes

Synthetic: Yes
Other_details: The Protein Was Chemically Synthesized, The Of The Protein Occurs Naturally In Hybrid White Striped Bas

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Bass hepcidin: Synthesis, solution structure, antimicrobial activities and synergism, and in vivo hepatic response to bacterial infections., Lauth X, Babon JJ, Stannard JA, Singh S, Nizet V, Carlberg JM, Ostland VE, Pennington MW, Norton RS, Westerman ME, J Biol Chem 2004 Nov 16;. PMID:15546886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]

Biological Unit Coordinates (1s6w.pdb1.gz) 5 Kb

CSU: Contacts of Structural Units for 1S6W

Original NMR restraints for 1S6W from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1S6W in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1S6W from S2C, [Save to disk]

View 1S6W in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S6W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1S6W, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1s6wa_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s6w_A] [1s6w]

SWISS-PROT database: [P82951]

Domain organization of [HEPC_MORCS] by SWISSPFAM

Other resources with information on 1S6W

Community annotation for 1S6W at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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