1S6Z	Luminescent Protein	date	Jan 28, 2004
title	Enhanced Green Fluorescent Protein Containing The Y66l Subst
authors	M.A.Rosenow, H.A.Huffman, M.E.Phail, R.M.Wachter
compound		source
Molecule: Green Fluorescent Protein Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109-De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsetb
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.800 62.739 69.966 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CL, CR0	enzyme
related structures	by homologous chain: 1H6R, 1YHH
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation., Rosenow MA, Huffman HA, Phail ME, Wachter RM, Biochemistry 2004 Apr 20;43(15):4464-72. PMID:15078092

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1s6z.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 1S6Z CSU: Contacts of Structural Units for 1S6Z Likely Quarternary Molecular Structure file(s) for 1S6Z Structure Factors (283 Kb) Retrieve 1S6Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1S6Z from S2C, [Save to disk] Re-refined 1s6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1S6Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S6Z

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1S6Z from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1S6Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s6za_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s6z] [1s6z_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1S6Z

Community annotation for 1S6Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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