1S7P Solution structure of thermolysin digested microcin J25 date
authors Rosengren, K.J., Blond, A., Afonso, C., Tabet, J.C., Rebuffat, S., Craik, D.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
Primary referenceStructure of thermolysin cleaved microcin J25: extreme stability of a two-chain antimicrobial peptide devoid of covalent links., Rosengren KJ, Blond A, Afonso C, Tabet JC, Rebuffat S, Craik DJ, Biochemistry 2004 Apr 27;43(16):4696-702. PMID:15096038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1s7p.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1S7P
  • Original NMR restraints for 1S7P from PDB
  • Retrieve 1S7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S7P from S2C, [Save to disk]
    • View 1S7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S7P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S7P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s7p.1, region A:,B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s7p] [1s7p_B] [1s7p_A]
  • SWISS-PROT database: [Q9X2V7]
  • Belongs to the microcin j25 (microsin j25) family according to TCDB.
  • Domain organization of [MCJA_ECOLX] by SWISSPFAM
    • Other resources with information on 1S7P
  • Community annotation for 1S7P at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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