1S88 Dna date Jan 31, 2004
title Nmr Structure Of A Dna Duplex With Two Ina Nucleotides Inser Opposite Each Other, Dctcaacxcaagct:Dagcttgxgttgag
authors C.B.Nielsen, M.Petersen, E.B.Pedersen, P.E.Hansen, U.B.Christens
compound source
Molecule: 5'-D(Cptpcpapapcp(2dm)Pcpapapgpcpt)-
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Apgpcptptpgp(2dm)Pgptptpgpapg)-
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand 2DM enzyme
Primary referenceNMR structure determination of a modified DNA oligonucleotide containing a new intercalating nucleic acid., Nielsen CB, Petersen M, Pedersen EB, Hansen PE, Christensen UB, Bioconjug Chem 2004 Mar-Apr;15(2):260-9. PMID:15025521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (1s88.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1S88
  • CSU: Contacts of Structural Units for 1S88
  • Retrieve 1S88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S88 from S2C, [Save to disk]
    • View 1S88 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S88, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s88_B] [1s88_A] [1s88]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1S88
  • Community annotation for 1S88 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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