1SA9 Rna date Feb 09, 2004
title Crystal Structure Of The Rna Octamer Ggcgagcc
authors S.B.Jang, K.Baeyens, M.S.Jeong, J.Santalucia Jr, D.Turner, S.R.Ho
compound source
Molecule: 5'-R(Gpgpcpgpapgpcpc)-3'
Chain: A, B, C, D, E
Engineered: Yes
Other_details: Rna Double Helix
Synthetic: Yes
symmetry Space Group: P 64
R_factor 0.241 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.650 69.650 68.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.86 Å
Primary referenceStructures of two RNA octamers containing tandem G.A base pairs., Jang SB, Baeyens K, Jeong MS, SantaLucia J Jr, Turner D, Holbrook SR, Acta Crystallogr D Biol Crystallogr 2004 May;60(Pt 5):829-35. Epub 2004, Apr 21. PMID:15103128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1sa9.pdb1.gz) 7 Kb
  • Biological Unit Coordinates (1sa9.pdb2.gz) 7 Kb
  • Biological Unit Coordinates (1sa9.pdb3.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1SA9
  • Likely Quarternary Molecular Structure file(s) for 1SA9
  • Structure Factors (35 Kb)
  • Retrieve 1SA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SA9 from S2C, [Save to disk]
  • Re-refined 1sa9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SA9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SA9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sa9_D] [1sa9_E] [1sa9_B] [1sa9_C] [1sa9] [1sa9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1SA9
  • Community annotation for 1SA9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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