1SCW Hydrolase date Feb 12, 2004
title Toward Better Antibiotics: Crystal Structure Of R61 Dd-Pepti Inhibited By A Novel Monocyclic Phosphate Inhibitor
authors N.R.Silvaggi, K.Kaur, S.A.Adediran, R.F.Pratt, J.A.Kelly
compound source
Molecule: D-Alanyl-D-Alanine Carboxypeptidase
Chain: A
Synonym: Dd-Peptidase, Dd-Carboxypeptidase
Ec: 3.4.16.4
Organism_scientific: Streptomyces Sp.
Organism_taxid: 31952
Strain: R61
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.900 66.700 100.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.13 Å
ligand CP5, GOL enzyme Hydrolase E.C.3.4.16.4 BRENDA
related structures by homologous chain: 1MPL, 1SDE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceToward better antibiotics: crystallographic studies of a novel class of DD-peptidase/beta-lactamase inhibitors., Silvaggi NR, Kaur K, Adediran SA, Pratt RF, Kelly JA, Biochemistry 2004 Jun 8;43(22):7046-53. PMID:15170342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (1scw.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 1SCW
  • CSU: Contacts of Structural Units for 1SCW
  • Likely Quarternary Molecular Structure file(s) for 1SCW
  • Structure Factors (923 Kb)
  • Retrieve 1SCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SCW from S2C, [Save to disk]
  • Re-refined 1scw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SCW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SCW from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SCW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1scwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1scw] [1scw_A]
  • SWISS-PROT database: [P15555]
  • Domain organization of [DAC_STRSR] by SWISSPFAM
  • Other resources with information on 1SCW
  • Community annotation for 1SCW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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