1SDY	Oxidoreductase(Superoxide Acceptor)	date	Jun 14, 1991
title	Structure Solution And Molecular Dynamics Refinement Of The Zn Enzyme Superoxide Dismutase
authors	K.Djinovic, G.Gatti, A.Coda, L.Antolini, G.Pelosi, A.Desideri, M.F F.Marmocchi, G.Rotilio, M.Bolognesi
compound		source
Molecule: Copper,Zinc Superoxide Dismutase Chain: A, B, C, D Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.300 143.000 62.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CU, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1F1D, 1JK9
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure solution and molecular dynamics refinement of the yeast Cu,Zn enzyme superoxide dismutase., Djinovic K, Gatti G, Coda A, Antolini L, Pelosi G, Desideri A, Falconi M, Marmocchi F, Rolilio G, Bolognesi M, Acta Crystallogr B 1991 Dec 1;47 ( Pt 6):918-27. PMID:1772629

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (1sdy.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 1SDY CSU: Contacts of Structural Units for 1SDY Likely Quarternary Molecular Structure file(s) for 1SDY Structure Factors (245 Kb) Retrieve 1SDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SDY from S2C, [Save to disk] Re-refined 1sdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SDY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SDY, from MSDmotif at EBI Genome occurence of 1SDY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1sdya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1sdyb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1sdyc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1sdyd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1sdy_A] [1sdy] [1sdy_D] [1sdy_B] [1sdy_C] SWISS-PROT database: [P00445] Domain organization of [SODC_YEAST] by SWISSPFAM

Other resources with information on 1SDY

Community annotation for 1SDY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---