1SFB Hydrolase date Feb 19, 2004
title Binding Of Penta-N-Acetylchitopentaose To Hew Lysozyme: A Po Diffraction Study
authors R.B.Von Dreele
compound source
Molecule: Lysozyme
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C; Allergen Gal D 4; G
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.000 79.000 38.137 90.00 90.00 90.00
method Powder Diffractionresolution
ligand NAG enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding of N-acetylglucosamine oligosaccharides to hen egg-white lysozyme: a powder diffraction study., Von Dreele RB, Acta Crystallogr D Biol Crystallogr 2005 Jan;61(Pt 1):22-32. Epub 2004 Dec, 17. PMID:15608372
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1sfb.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1SFB
  • CSU: Contacts of Structural Units for 1SFB
  • Likely Quarternary Molecular Structure file(s) for 1SFB
  • Structure Factors (98 Kb)
  • Retrieve 1SFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SFB from S2C, [Save to disk]
  • View 1SFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SFB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SFB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sfba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sfb_A] [1sfb]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1SFB: [LYZ1 ] by SMART
  • Other resources with information on 1SFB
  • Community annotation for 1SFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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