1SFD Electron Transport date Feb 19, 2004
title Oxidized Form Of Amicyanin Mutant P94f
authors C.J.Carrell, D.Sun, S.Jiang, V.L.Davidson, F.S.Mathews
compound source
Molecule: Amicyanin
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266
Gene: Mauc, Ami
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.030 59.500 74.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.99 Å
ligand CU, SO4 enzyme
related structures by homologous chain: 1SF3
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceStructural Studies of Two Mutants of Amicyanin from Paracoccus denitrificans That Stabilize the Reduced State of the Copper(,)., Carrell CJ, Sun D, Jiang S, Davidson VL, Mathews FS, Biochemistry 2004 Jul 27;43(29):9372-80. PMID:15260480
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1sfd.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1sfd.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1SFD
  • CSU: Contacts of Structural Units for 1SFD
  • Likely Quarternary Molecular Structure file(s) for 1SFD
  • Structure Factors (791 Kb)
  • Retrieve 1SFD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SFD from S2C, [Save to disk]
  • Re-refined 1sfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SFD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SFD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1SFD 1SFDA 1SFDB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SFD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sfda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sfdb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sfd_A] [1sfd_B] [1sfd]
  • SWISS-PROT database: [P22364]
  • Domain organization of [AMCY_PARDE] by SWISSPFAM
    • Other resources with information on 1SFD
  • Community annotation for 1SFD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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