1SFX Structural Genomics, Unknown Function date Feb 20, 2004
title X-Ray Crystal Structure Of Putative Hth Transcription Regula Archaeoglobus Fulgidus
authors J.Osipiuk, T.Skarina, A.Savchenko, A.Edwards, M.Cymborowski, W.Mi A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Conserved Hypothetical Protein Af2008
Chain: A, B
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 224325
Strain: Dsm 4304
Gene: Af2008
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.148 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.265 59.634 63.498 90.00 90.11 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CL, EDO, MSE enzyme
note 1SFX is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1sfx.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (1sfx.pdb2.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 1SFX
  • CSU: Contacts of Structural Units for 1SFX
  • Likely Quarternary Molecular Structure file(s) for 1SFX
  • Structure Factors (271 Kb)
  • Retrieve 1SFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SFX from S2C, [Save to disk]
  • Re-refined 1sfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SFX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SFX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sfxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sfxb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sfx_A] [1sfx_B] [1sfx]
  • SWISS-PROT database: [O28271]
  • Domain organization of [O28271_ARCFU] by SWISSPFAM
  • Other resources with information on 1SFX
  • Community annotation for 1SFX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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