1SGS Dna date Feb 24, 2004
title Crystal Structure Of A Free Kb Dna
authors D.B.Huang, C.B.Phelps, A.J.Fusco, G.Ghosh
compound source
Molecule: Kb Dna
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: The Protein Was Chemically Synthesized. The Of The Protein Naturally Occurs In Homo Sapiens (Human).
symmetry Space Group: H 3 2
R_factor 0.207 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.916 38.916 158.910 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA enzyme
Primary referenceCrystal structure of a free kappaB DNA: insights into DNA recognition by transcription factor NF-kappaB., Huang DB, Phelps CB, Fusco AJ, Ghosh G, J Mol Biol 2005 Feb 11;346(1):147-60. Epub 2004 Dec 13. PMID:15663934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1sgs.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1SGS
  • CSU: Contacts of Structural Units for 1SGS
  • Likely Quarternary Molecular Structure file(s) for 1SGS
  • Retrieve 1SGS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SGS from S2C, [Save to disk]
  • View 1SGS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SGS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SGS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sgs_A] [1sgs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1SGS
  • Community annotation for 1SGS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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