1SHD Complex(Transferase Peptide) date Nov 10, 1994
title Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interaction
authors T.Gilmer, S.Jordan
compound source
Molecule: C-Src Tyrosine Kinase Sh2 Domain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet11b

Molecule: Trka Receptor
Chain: B
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.500 44.900 75.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACE, PTR BindingDB enzyme
related structures by homologous chain: 1A09, 1O46
Primary referencePeptide inhibitors of src SH3-SH2-phosphoprotein interactions., Gilmer T, Rodriguez M, Jordan S, Crosby R, Alligood K, Green M, Kimery M, Wagner C, Kinder D, Charifson P, et al., J Biol Chem 1994 Dec 16;269(50):31711-9. PMID:7527393
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1shd.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1SHD
  • CSU: Contacts of Structural Units for 1SHD
  • Likely Quarternary Molecular Structure file(s) for 1SHD
  • Retrieve 1SHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SHD from S2C, [Save to disk]
  • View 1SHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SHD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SHD, from MSDmotif at EBI
  • Genome occurence of 1SHD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1shda_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1shd_B] [1shd_A] [1shd]
  • SWISS-PROT database: [P12931]
  • Domain organization of [SRC_HUMAN] by SWISSPFAM
  • Domain found in 1SHD: [SH2 ] by SMART
  • Other resources with information on 1SHD
  • Community annotation for 1SHD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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