1SJ9 Transferase date Mar 03, 2004
title Crystal Structure Of The Uridine Phosphorylase From Salmonel Typhimurium At 2.5a Resolution
authors M.Dontsova, A.Gabdoulkhakov, E.Morgunova, M.Garber, S.Nikonov, C. S.Ealick, A.Mikhailov
compound source
Molecule: Uridine Phosphorylase
Chain: A, B, C, D, E, F
Synonym: Urdpase, Upase
Ec: 2.4.2.3
Engineered: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 99287
Strain: Lt2
Gene: Udp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbluescript Iisk
symmetry Space Group: P 61
R_factor 0.221 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.370 91.370 266.380 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand PO4 enzyme Transferase E.C.2.4.2.3 BRENDA
related structures by homologous chain: 1K3F, 1RXS
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referencePreliminary investigation of the three-dimensional structure of Salmonella typhimurium uridine phosphorylase in the crystalline state., Dontsova MV, Gabdoulkhakov AG, Molchan OK, Lashkov AA, Garber MB, Mironov AS, Zhukhlistova NE, Morgunova EY, Voelter W, Betzel C, Zhang Y, Ealick SE, Mikhailov AM, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Apr 1;61(Pt, 4):337-40. Epub 2005 Mar 24. PMID:16511035
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (1sj9.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 1SJ9
  • CSU: Contacts of Structural Units for 1SJ9
  • Likely Quarternary Molecular Structure file(s) for 1SJ9
  • Structure Factors (412 Kb)
  • Retrieve 1SJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJ9 from S2C, [Save to disk]
  • Re-refined 1sj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SJ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sj9_C] [1sj9_E] [1sj9_D] [1sj9] [1sj9_B] [1sj9_A] [1sj9_F]
  • SWISS-PROT database: [P0A1F6]
  • Domain organization of [UDP_SALTY] by SWISSPFAM
  • Other resources with information on 1SJ9
  • Community annotation for 1SJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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