1SO8	Oxidoreductase	date	Mar 13, 2004
title	Abeta-Bound Human Abad Structure [Also Known As 3-Hydroxyacy Dehydrogenase Type II (Type II Hadh), Endoplasmic Reticulum Associated Amyloid Beta-Peptide Binding Protein (Erab)]
authors	J.W.Lustbader, M.Cirilli, H.Wu
compound		source
Molecule: 3-Hydroxyacyl-Coa Dehydrogenase Type II Chain: A Synonym: Type II Hadh, Endoplasmic Reticulum-Associated Amy Peptide Binding Protein (Erab), Short-Chain Type Dehydrogenasereductase Xh98g2; Ec: 1.1.1.35 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hadh2, Erab, Xh98g2, Schad Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pge5
symmetry	Space Group: P 4 3 2	R_factor 0.231 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.000 130.000 130.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, NA	enzyme	Oxidoreductase E.C.1.1.1.35 BRENDA
related structures	by homologous chain: 1U7T
Gene Ontology	Chain Function Process Component A
Primary reference	ABAD directly links Abeta to mitochondrial toxicity in Alzheimer's disease., Lustbader JW, Cirilli M, Lin C, Xu HW, Takuma K, Wang N, Caspersen C, Chen X, Pollak S, Chaney M, Trinchese F, Liu S, Gunn-Moore F, Lue LF, Walker DG, Kuppusamy P, Zewier ZL, Arancio O, Stern D, Yan SS, Wu H, Science 2004 Apr 16;304(5669):448-52. PMID:15087549

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (1so8.pdb1.gz) 126 Kb Biological Unit Coordinates (1so8.pdb2.gz) 252 Kb LPC: Ligand-Protein Contacts for 1SO8 CSU: Contacts of Structural Units for 1SO8 Likely Quarternary Molecular Structure file(s) for 1SO8 Structure Factors (142 Kb) Retrieve 1SO8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SO8 from S2C, [Save to disk] Re-refined 1so8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SO8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SO8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SO8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1so8a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1so8_A] [1so8] SWISS-PROT database: [Q99714] Domain organization of [HCD2_HUMAN] by SWISSPFAM

Other resources with information on 1SO8

Community annotation for 1SO8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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