1SPD Oxidoreductase date Jul 21, 1993
title Amyotrophic Lateral Sclerosis And Structural Defects In Cu,Z Superoxide Dismutase
authors H.E.Parge, J.A.Tainer
compound source
Molecule: Superoxide Dismutase
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 63
R_factor 0.224 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.570 113.570 71.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACE, CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1CB4, 1SDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceAmyotrophic lateral sclerosis and structural defects in Cu,Zn superoxide dismutase., Deng HX, Hentati A, Tainer JA, Iqbal Z, Cayabyab A, Hung WY, Getzoff ED, Hu P, Herzfeldt B, Roos RP, et al., Science 1993 Aug 20;261(5124):1047-51. PMID:8351519
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1spd.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1SPD
  • CSU: Contacts of Structural Units for 1SPD
  • Likely Quarternary Molecular Structure file(s) for 1SPD
  • Retrieve 1SPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SPD from S2C, [Save to disk]
  • View 1SPD in 3D
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  • Visual 3D analysis of 1SPD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SPD, from MSDmotif at EBI
  • Genome occurence of 1SPD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1spda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1spdb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1spd_B] [1spd] [1spd_A]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 1SPD
  • Community annotation for 1SPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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