1SPV Structural Genomics, Unknown Function date Mar 17, 2004
title Crystal Structure Of The Putative Phosphatase Of Escherichia Northeast Structural Genomoics Target Er58
authors F.Forouhar, I.Lee, S.M.Vorobiev, R.Xiao, T.B.Acton, G.T.Montelion J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (N
compound source
Molecule: Putative Polyproteinphosphatase
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: C 1 2 1
R_factor 0.201 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.788 40.855 69.346 90.00 103.49 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MES, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1spv.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1SPV
  • CSU: Contacts of Structural Units for 1SPV
  • Likely Quarternary Molecular Structure file(s) for 1SPV
  • Structure Factors (338 Kb)
  • Retrieve 1SPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SPV from S2C, [Save to disk]
  • Re-refined 1spv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SPV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SPV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1spva_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1spv_A] [1spv]
  • SWISS-PROT database: [P0A8D6]
  • Domain organization of [YMDB_ECOLI] by SWISSPFAM
  • Domain found in 1SPV: [A1pp ] by SMART
  • Other resources with information on 1SPV
  • Community annotation for 1SPV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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