1SUM Transport Protein date Mar 26, 2004
title Crystal Structure Of A Hypothetical Protein At 2.0 A Resolut
authors J.Liu, Y.Lou, H.Yokota, P.D.Adams, R.Kim, S.H.Kim, Berkeley Struct Genomics Center (Bsgc)
compound source
Molecule: Phosphate Transport System Protein Phou Homolog 2
Chain: B
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Psjs1244 Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pb4
symmetry Space Group: P 31 2 1
R_factor 0.217 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.677 90.677 45.255 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, FE, NI, PO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCrystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters., Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH, J Biol Chem 2005 Apr 22;280(16):15960-6. Epub 2005 Feb 16. PMID:15716271
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1sum.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1sum.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1SUM
  • CSU: Contacts of Structural Units for 1SUM
  • Likely Quarternary Molecular Structure file(s) for 1SUM
  • Structure Factors (104 Kb)
  • Retrieve 1SUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SUM from S2C, [Save to disk]
  • Re-refined 1sum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SUM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SUM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sumb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sum_B] [1sum]
  • SWISS-PROT database: [Q9X256]
  • Domain organization of [PHOU2_THEMA] by SWISSPFAM
  • Other resources with information on 1SUM
  • Community annotation for 1SUM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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