1SV6 Lyase date Mar 28, 2004
title Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase Fr Escherichia Coli
authors A.A.Fedorov, E.V.Fedorov, A.Sharp, S.C.Almo, S.K.Burley, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: 2-Keto-4-Pentenoate Hydratase
Chain: A, B, C, D, E
Synonym: 2-Hydroxypentadienoic Acid Hydratase
Ec: 4.2.1.-
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Mhpd, B0350
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.239 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.222 121.507 111.796 90.00 94.10 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Lyase E.C.4.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (1sv6.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1sv6.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (1sv6.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (1sv6.pdb4.gz) 42 Kb
  • Biological Unit Coordinates (1sv6.pdb5.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1SV6
  • Likely Quarternary Molecular Structure file(s) for 1SV6
  • Structure Factors (471 Kb)
  • Retrieve 1SV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SV6 from S2C, [Save to disk]
  • Re-refined 1sv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SV6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sv6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sv6b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1sv6c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1sv6d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1sv6e_, region E [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sv6_D] [1sv6] [1sv6_B] [1sv6_C] [1sv6_A] [1sv6_E]
  • SWISS-PROT database: [P77608]
  • Domain organization of [MHPD_ECOLI] by SWISSPFAM
    • Other resources with information on 1SV6
  • Community annotation for 1SV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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