1SVF Viral Protein date Feb 27, 1999
title Paramyxovirus Sv5 Fusion Protein Core
authors K.A.Baker, R.E.Dutch, R.A.Lamb, T.S.Jardetzky
compound source
Molecule: Protein (Fusion Glycoprotein)
Chain: A, C
Fragment: Post Fusion Core (Residue 122-185)
Engineered: Yes
Mutation: Yes
Other_details: 4 Putative Chloride Ions Included
Organism_scientific: Simian Virus 5 (Strain W3)
Organism_taxid: 11208
Strain: W3
Gene: Fusion Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1-N1, Pgex-4t-1-N1
Expression_system_gene: N1
Other_details: Cleaved Gst Fusion

Molecule: Protein (Fusion Glycoprotein)
Chain: B, D
Fragment: Post Fusion Core (Residue 440-477)
Engineered: Yes
Other_details: 4 Putative Chloride Ions Included

Organism_scientific: Simian Virus 5 (Strain W3)
Organism_taxid: 11208
Strain: W3
Gene: Fusion Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1-N1, Pgex-4t-1-N1
Expression_system_gene: N1
Other_details: Cleaved Gst Fusion
symmetry Space Group: P 3
R_factor 0.181 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.600 41.600 95.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL enzyme
note 1SVF is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural basis for paramyxovirus-mediated membrane fusion., Baker KA, Dutch RE, Lamb RA, Jardetzky TS, Mol Cell 1999 Mar;3(3):309-19. PMID:10198633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1svf.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (1svf.pdb2.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1SVF
  • CSU: Contacts of Structural Units for 1SVF
  • Likely Quarternary Molecular Structure file(s) for 1SVF
  • Retrieve 1SVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVF from S2C, [Save to disk]
  • View 1SVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SVF 1SVFA 1SVFB 1SVFC 1SVFD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SVF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1svfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1svfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1svfc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1svfd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1svf] [1svf_B] [1svf_A] [1svf_D] [1svf_C]
  • SWISS-PROT database: [P04849]
  • Domain organization of [FUS_SV5] by SWISSPFAM
  • Other resources with information on 1SVF
  • Community annotation for 1SVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science