1SZJ	Oxidoreductase	date	Feb 04, 1997
title	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase F Palinurus Versicolor Refined 2.0 Angstrom Resolution
authors	S.Song, J.Li, Z.Lin
compound		source
Molecule: D-Glyceraldehyde-3-Phosphate-Dehydrogenase Chain: G, R Fragment: Nad+ Binding Domain And Catalytic Domain Ec: 1.2.1.12 Other_details: Complex With Nad+		Organism_scientific: Palinurus Versicolor Organism_common: South China Sea Lobster Organism_taxid: 82835 Organ: Tail Tissue: Tail Muscle
symmetry	Space Group: C 1 2 1	R_factor 0.168 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.400 99.900 80.790 90.00 114.48 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	NAD, SO4	enzyme	Oxidoreductase E.C.1.2.1.12 BRENDA
related structures	by homologous chain: 1CRW, 1DC5
Gene Ontology	Chain Function Process Component R, G
Primary reference	Preliminary crystallographic studies of lobster D-glyceraldehyde-3-phosphate dehydrogenase and the modified enzyme carrying the fluorescent derivative., Song SY, Gao YG, Zhou JM, Tsou CL, J Mol Biol 1983 Dec 5;171(2):225-8. PMID:6655693

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (1szj.pdb1.gz) 215 Kb LPC: Ligand-Protein Contacts for 1SZJ CSU: Contacts of Structural Units for 1SZJ Likely Quarternary Molecular Structure file(s) for 1SZJ Structure Factors (454 Kb) Retrieve 1SZJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SZJ from S2C, [Save to disk] Re-refined 1szj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SZJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SZJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SZJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1szjg1, region G:1-148,G:313-334 [Jmol] [rasmolscript] [script source]     - Domain d1szjg2, region G:149-312 [Jmol] [rasmolscript] [script source]     - Domain d1szjr1, region R:1-148,R:313-334 [Jmol] [rasmolscript] [script source]     - Domain d1szjr2, region R:149-312 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1szj_G] [1szj] [1szj_R] SWISS-PROT database: [P56649] Domain organization of [G3P_PANVR] by SWISSPFAM Domain found in 1SZJ: [Gp_dh_N ] by SMART

Other resources with information on 1SZJ

Community annotation for 1SZJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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