1SZP Dna Binding Protein date Apr 06, 2004
title A Crystal Structure Of The Rad51 Filament
authors A.B.Conway, T.W.Lynch, Y.Zhang, G.S.Fortin, L.S.Symington, P.A.Ri
compound source
Molecule: Dna Repair Protein Rad51
Chain: A, B, C, D, E, F
Fragment: Del(1-79)
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rad51, Yer095w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 31
R_factor 0.268 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.262 135.262 128.887 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
ligand SO4 enzyme
note 1SZP (Molecule of the Month:pdb172)
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of a Rad51 filament., Conway AB, Lynch TW, Zhang Y, Fortin GS, Fung CW, Symington LS, Rice PA, Nat Struct Mol Biol 2004 Aug;11(8):791-6. Epub 2004 Jul 4. PMID:15235592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (1szp.pdb1.gz) 258 Kb
  • Biological Unit Coordinates (1szp.pdb2.gz) 239 Kb
  • Biological Unit Coordinates (1szp.pdb3.gz) 259 Kb
  • LPC: Ligand-Protein Contacts for 1SZP
  • CSU: Contacts of Structural Units for 1SZP
  • Likely Quarternary Molecular Structure file(s) for 1SZP
  • Structure Factors (343 Kb)
  • Retrieve 1SZP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SZP from S2C, [Save to disk]
  • Re-refined 1szp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SZP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SZP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SZP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1szpa2, region A:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpa1, region A:81-144 [Jmol] [rasmolscript] [script source]
        - Domain d1szpb2, region B:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpb1, region B:89-144 [Jmol] [rasmolscript] [script source]
        - Domain d1szpc2, region C:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpc1, region C:89-144 [Jmol] [rasmolscript] [script source]
        - Domain d1szpd2, region D:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpd1, region D:81-144 [Jmol] [rasmolscript] [script source]
        - Domain d1szpe2, region E:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpe1, region E:81-144 [Jmol] [rasmolscript] [script source]
        - Domain d1szpf2, region F:145-395 [Jmol] [rasmolscript] [script source]
        - Domain d1szpf1, region F:81-144 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1szp_D] [1szp_B] [1szp_E] [1szp_A] [1szp_F] [1szp] [1szp_C]
  • SWISS-PROT database: [P25454]
  • Domain organization of [RAD51_YEAST] by SWISSPFAM
  • Domains found in 1SZP: [AAA] [HhH1 ] by SMART
  • Other resources with information on 1SZP
  • Community annotation for 1SZP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science