1T34 Signaling Protein,Membrane Protein date Apr 23, 2004
title Rotation Mechanism For Transmembrane Signaling By The Atrial Natriuretic Peptide Receptor
authors H.Ogawa, Y.Qiu, C.M.Ogata, K.S.Misono
compound source
Molecule: Atrial Natriuretic Peptide Receptor A
Chain: A, B
Fragment: Hormone Binding Domain (Residues 1-435)
Synonym: Anp-A; Anpra; Gc-A; Guanylate Cyclase; Npr-A; Atri Natriuretic Peptide A-Type Receptor;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Npr1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Baby Hampster Kidney Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3-Npra-Ecd

Molecule: Atrial Natriuretic Peptide Factor
Chain: H
Fragment: Residues 129-149
Synonym: Anf; Anp; Prepronatriodilatin; Atrial Natriuretic
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs In Rattus Norvegicus
symmetry Space Group: P 61
R_factor 0.237 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.131 100.131 259.803 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand CL, NAG enzyme
related structures by homologous chain: 1OXW
Gene
Ontology
ChainFunctionProcessComponent
A, B


H


Primary referenceCrystal structure of hormone-bound atrial natriuretic peptide receptor extracellular domain: rotation mechanism for transmembrane signal transduction., Ogawa H, Qiu Y, Ogata CM, Misono KS, J Biol Chem 2004 Jul 2;279(27):28625-31. Epub 2004 Apr 26. PMID:15117952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1t34.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 1T34
  • CSU: Contacts of Structural Units for 1T34
  • Likely Quarternary Molecular Structure file(s) for 1T34
  • Retrieve 1T34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T34 from S2C, [Save to disk]
  • View 1T34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T34
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T34, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t34a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t34b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t34_B] [1t34] [1t34_H] [1t34_A]
  • SWISS-PROT database: [P01161] [P18910]
  • Domain organization of [ANF_RAT] [ANPRA_RAT] by SWISSPFAM
  • Domain found in 1T34: [NAT_PEP ] by SMART
  • Other resources with information on 1T34
  • Community annotation for 1T34 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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