1T36	Ligase	date	Apr 24, 2004
title	Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Subunit Mutant C248d Complexed With Uridine 5'-Monophosphat
authors	J.B.Thoden, X.Huang, F.M.Raushel, H.M.Holden
compound		source
Molecule: Carbamoyl-Phosphate Synthase Large Chain Chain: A, C, E, G Synonym: Carbamoyl-Phosphate Synthetase Ammonia Chain Ec: 6.3.5.5 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Carb, Pyra, B0033 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15
Molecule: Carbamoyl-Phosphate Synthase Small Chain Chain: B, D, F, H Synonym: Carbamoyl-Phosphate Synthetase Glutamine Chain Ec: 6.3.5.5 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Cara, Pyra, B0032, Z0037, Ecs0035 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15
symmetry	Space Group: P 21 21 21	R_factor 0.176 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 152.500 164.900 333.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ADP, CL, K, MN, NET, ORN, PO4, U	enzyme	Ligase E.C.6.3.5.5 BRENDA
related structures	by homologous chain: 1JDB, 1M6V
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	Long-range allosteric transitions in carbamoyl phosphate synthetase., Thoden JB, Huang X, Kim J, Raushel FM, Holden HM, Protein Sci 2004 Sep;13(9):2398-405. PMID:15322282

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (977 Kb) [Save to disk] Biological Unit Coordinates (1t36.pdb1.gz) 964 Kb LPC: Ligand-Protein Contacts for 1T36 CSU: Contacts of Structural Units for 1T36 Likely Quarternary Molecular Structure file(s) for 1T36 Structure Factors (4064 Kb) Retrieve 1T36 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T36 from S2C, [Save to disk] Re-refined 1t36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T36 in 3D

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Visual 3D analysis of 1T36

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T36, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t36a3, region A:1-127 [Jmol] [rasmolscript] [script source]     - Domain d1t36a5, region A:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1t36a1, region A:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1t36a4, region A:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1t36a6, region A:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1t36a2, region A:936-1073 [Jmol] [rasmolscript] [script source]     - Domain d1t36b2, region B:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1t36b1, region B:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1t36c3, region C:1-127 [Jmol] [rasmolscript] [script source]     - Domain d1t36c5, region C:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1t36c1, region C:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1t36c4, region C:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1t36c6, region C:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1t36c2, region C:936-1073 [Jmol] [rasmolscript] [script source]     - Domain d1t36d2, region D:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1t36d1, region D:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1t36e3, region E:1-127 [Jmol] [rasmolscript] [script source]     - Domain d1t36e5, region E:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1t36e1, region E:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1t36e4, region E:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1t36e6, region E:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1t36e2, region E:936-1073 [Jmol] [rasmolscript] [script source]     - Domain d1t36f2, region F:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1t36f1, region F:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1t36g3, region G:1-127 [Jmol] [rasmolscript] [script source]     - Domain d1t36g5, region G:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1t36g1, region G:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1t36g4, region G:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1t36g6, region G:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1t36g2, region G:936-1073 [Jmol] [rasmolscript] [script source]     - Domain d1t36h2, region H:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1t36h1, region H:2-152 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t36_E] [1t36_G] [1t36] [1t36_H] [1t36_A] [1t36_C] [1t36_F] [1t36_B] [1t36_D] SWISS-PROT database: [P0A6F1] [P00968] Domain organization of [CARA_ECOLI] [CARB_ECOLI] by SWISSPFAM Domains found in 1T36: [CPSase_L_D3] [CPSase_sm_chain] [MGS ] by SMART

Other resources with information on 1T36

Community annotation for 1T36 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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