1T4G Recombination date Apr 29, 2004
title Atpase In Complex With Amp-Pnp
authors Y.Wu, Y.He, I.A.Moya, X.Qian, Y.Luo
compound source
Molecule: Dna Repair And Recombination Protein Rada
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Methanococcus Voltae
Organism_taxid: 2188
Gene: Rada
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus-Ril
symmetry Space Group: P 61
R_factor 0.219 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.699 83.699 106.672 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ANP, MG enzyme
related structures by homologous chain: 1XU4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of archaeal recombinase RADA; a snapshot of its extended conformation., Wu Y, He Y, Moya IA, Qian X, Luo Y, Mol Cell 2004 Aug 13;15(3):423-35. PMID:15304222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1t4g.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1T4G
  • CSU: Contacts of Structural Units for 1T4G
  • Likely Quarternary Molecular Structure file(s) for 1T4G
  • Structure Factors (306 Kb)
  • Retrieve 1T4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T4G from S2C, [Save to disk]
  • Re-refined 1t4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T4G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T4G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t4ga1, region A:5-64 [Jmol] [rasmolscript] [script source]
        - Domain d1t4ga2, region A:65-322 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t4g_A] [1t4g]
  • SWISS-PROT database: [O73948]
  • Domain organization of [RADA_METVO] by SWISSPFAM
  • Domains found in 1T4G: [AAA] [HhH1 ] by SMART
    • Other resources with information on 1T4G
  • Community annotation for 1T4G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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