1T5N Antibiotic date May 04, 2004
title Structural Transitions As Determinants Of Calcium-Dependent Daptomycin
authors D.Jung, A.Rozek, M.Okon, R.E.Hancock
compound source
Molecule: Daptomycin
Chain: A
Synonym: A21978c, Cubicin
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Roseosporus
Organism_taxid: 67294
methodSolution NMR
ligand DAL, DKA, DSG, DSN, KYN, LME, ORN enzyme
Primary referenceStructural transitions as determinants of the action of the calcium-dependent antibiotic daptomycin., Jung D, Rozek A, Okon M, Hancock RE, Chem Biol 2004 Jul;11(7):949-57. PMID:15271353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1t5n.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1T5N
  • CSU: Contacts of Structural Units for 1T5N
  • Retrieve 1T5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T5N from S2C, [Save to disk]
  • View 1T5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T5N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T5N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t5n] [1t5n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1T5N
  • Community annotation for 1T5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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