1T67	Hydrolase	date	May 05, 2004
title	Crystal Structure Of Human Hdac8 Complexed With Ms-344
authors	J.R.Somoza, R.J.Skene, B.A.Katz, C.Mol, J.D.Ho, A.J.Jennings, C.Lu A.Arvai, J.J.Buggy, E.Chi, J.Tang, B.C.Sang, E.Verner, R.Wynands E.M.Leahy, D.R.Dougan, G.Snell, M.Navre, M.W.Knuth, R.V.Swanson, D.E.Mcree, L.W.Tari
compound		source
Molecule: Histone Deacetylase 8 Chain: A Synonym: Hdac8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Psxb2 Expression_system_plasmid: Pfastbachta
symmetry	Space Group: P 31 2 1	R_factor 0.212 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.644 80.644 105.523 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.31 Å
ligand	B3N, NA, ZN	enzyme
related structures	by homologous chain: 1VKG, 1W22
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases., Somoza JR, Skene RJ, Katz BA, Mol C, Ho JD, Jennings AJ, Luong C, Arvai A, Buggy JJ, Chi E, Tang J, Sang BC, Verner E, Wynands R, Leahy EM, Dougan DR, Snell G, Navre M, Knuth MW, Swanson RV, McRee DE, Tari LW, Structure (Camb) 2004 Jul;12(7):1325-34. PMID:15242608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1t67.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 1T67 CSU: Contacts of Structural Units for 1T67 Likely Quarternary Molecular Structure file(s) for 1T67 Structure Factors (145 Kb) Retrieve 1T67 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T67 from S2C, [Save to disk] Re-refined 1t67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T67 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T67

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T67, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t67a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t67_A] [1t67] SWISS-PROT database: [Q9BY41] Domain organization of [HDAC8_HUMAN] by SWISSPFAM

Other resources with information on 1T67

Community annotation for 1T67 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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