1T6U	Oxidoreductase	date	May 07, 2004
title	Nickel Superoxide Dismutase (Nisod) Native 1.30 A Structure
authors	D.P.Barondeau, C.J.Kassmann, C.K.Bruns, J.A.Tainer, E.D.Getzoff
compound		source
Molecule: Superoxide Dismutase [Ni] Chain: A, B, C, D, E, F, G, H, I, J, K, L Synonym: Nisod, Nickel- Containing Superoxide Dismutase Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Streptomyces Coelicolor Organism_taxid: 1902 Gene: Sodn, Sod1, Sco5254, 2sc7g11.16c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.147 111.680 106.834 90.00 94.51 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	NI	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
note	1T6U is a representative structure
related structures	by homologous chain: 1Q0G
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Nickel superoxide dismutase structure and mechanism., Barondeau DP, Kassmann CJ, Bruns CK, Tainer JA, Getzoff ED, Biochemistry 2004 Jun 29;43(25):8038-47. PMID:15209499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk] Biological Unit Coordinates (1t6u.pdb1.gz) 260 Kb Biological Unit Coordinates (1t6u.pdb2.gz) 261 Kb LPC: Ligand-Protein Contacts for 1T6U CSU: Contacts of Structural Units for 1T6U Likely Quarternary Molecular Structure file(s) for 1T6U Structure Factors (2921 Kb) Retrieve 1T6U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T6U from S2C, [Save to disk] Re-refined 1t6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T6U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T6U

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1T6U 1T6UA 1T6UB 1T6UC 1T6UD 1T6UE 1T6UF 1T6UG 1T6UH 1T6UI 1T6UJ 1T6UK 1T6UL from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T6U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t6ua_, region A [Jmol] [rasmolscript] [script source]     - Domain d1t6ub_, region B [Jmol] [rasmolscript] [script source]     - Domain d1t6uc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1t6ud_, region D [Jmol] [rasmolscript] [script source]     - Domain d1t6ue_, region E [Jmol] [rasmolscript] [script source]     - Domain d1t6uf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1t6ug_, region G [Jmol] [rasmolscript] [script source]     - Domain d1t6uh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1t6ui_, region I [Jmol] [rasmolscript] [script source]     - Domain d1t6uj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1t6uk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1t6ul_, region L [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t6u_C] [1t6u_A] [1t6u_B] [1t6u_L] [1t6u_K] [1t6u_H] [1t6u] [1t6u_E] [1t6u_G] [1t6u_J] [1t6u_F] [1t6u_D] [1t6u_I] SWISS-PROT database: [P80735] Domain organization of [SODN_STRCO] by SWISSPFAM

Other resources with information on 1T6U

Community annotation for 1T6U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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