1TBD Dna Binding Protein date Nov 04, 1996
title Solution Structure Of The Origin Dna Binding Domain Of Sv40 Nmr, Minimized Average Structure
authors X.Luo, D.G.Sanford, P.A.Bullock, W.W.Bachovchin
compound source
Molecule: Sv40 T-Antigen
Chain: A
Fragment: Dna Binding Domain
Engineered: Yes
 Organism_scientific: Simian Virus 40
Organism_taxid: 10633
Cell_line: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1TBD (Molecule of the Month:pdb47)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the origin DNA-binding domain of SV40 T-antigen., Luo X, Sanford DG, Bullock PA, Bachovchin WW, Nat Struct Biol 1996 Dec;3(12):1034-9. PMID:8946857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1tbd.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1TBD
  • Original NMR restraints for 1TBD from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TBD from S2C, [Save to disk]
    • View 1TBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TBD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tbd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tbd_A] [1tbd]
  • SWISS-PROT database: [P03070]
  • Domain organization of [LT_SV40] by SWISSPFAM
    • Other resources with information on 1TBD
  • Community annotation for 1TBD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1TBD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science