1TBX Viral Protein date May 20, 2004
title Crystal Structure Of Ssv1 F-93
authors P.Kraft, A.Oeckinghaus, D.Kummel, G.H.Gauss, B.Wiedenheft, M.Youn C.M.Lawrence
compound source
Molecule: Hypothetical 11.0 Kda Protein
Chain: A, B
Synonym: Orf F-93
Engineered: Yes
 Organism_scientific: Sulfolobus Virus 1
Organism_taxid: 244589
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 3 2
R_factor 0.191 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.493 120.493 120.493 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE enzyme
note 1TBX is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein., Kraft P, Oeckinghaus A, Kummel D, Gauss GH, Gilmore J, Wiedenheft B, Young M, Lawrence CM, J Virol. 2004 Nov;78(21):11544-50. PMID:15479795
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1tbx.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1tbx.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1TBX
  • CSU: Contacts of Structural Units for 1TBX
  • Likely Quarternary Molecular Structure file(s) for 1TBX
  • Structure Factors (76 Kb)
  • Retrieve 1TBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TBX from S2C, [Save to disk]
  • Re-refined 1tbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TBX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TBX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tbxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tbxb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tbx_A] [1tbx] [1tbx_B]
  • SWISS-PROT database: [P20222]
  • Domain organization of [F93_SSV1] by SWISSPFAM
    • Other resources with information on 1TBX
  • Community annotation for 1TBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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