1TED Transferase date May 25, 2004
title Crystal Structure Of A Type III Polyketide Synthase Pks18 Fr Mycobacterium Tuberculosis
authors R.Sankaranarayanan, V.M.Shanmugam, R.Rukmini
compound source
Molecule: Pks18
Chain: A, B, C, D
Synonym: Polyketide Synthase
Ec: 2.3.1.74
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Pks18
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21c
symmetry Space Group: P 1
R_factor 0.205 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.914 80.654 99.612 108.23 92.97 103.69
method X-Ray Diffractionresolution 2.25 Å
ligand MYR enzyme Transferase E.C.2.3.1.74 BRENDA
related structures by homologous chain: 1TEE
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA novel tunnel in mycobacterial type III polyketide synthase reveals the structural basis for generating diverse metabolites., Sankaranarayanan R, Saxena P, Marathe UB, Gokhale RS, Shanmugam VM, Rukmini R, Nat Struct Mol Biol 2004 Sep;11(9):894-900. Epub 2004 Aug 1. PMID:15286723
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (1ted.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (1ted.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1TED
  • CSU: Contacts of Structural Units for 1TED
  • Likely Quarternary Molecular Structure file(s) for 1TED
  • Structure Factors (650 Kb)
  • Retrieve 1TED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TED from S2C, [Save to disk]
  • Re-refined 1ted structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TED
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TED, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1teda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tedb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1tedc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1tedd_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ted_A] [1ted] [1ted_D] [1ted_C] [1ted_B]
  • SWISS-PROT database: [Q7D8I1]
  • Domain organization of [Q7D8I1_MYCTU] by SWISSPFAM
  • Other resources with information on 1TED
  • Community annotation for 1TED at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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