1TFZ Oxidoreductase date May 27, 2004
title Structural Basis For Herbicidal Inhibitor Selectivity Reveal Comparison Of Crystal Structures Of Plant And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
authors C.Yang, J.W.Pflugrath, D.L.Camper, M.L.Foster, D.J.Pernich, T.A.W
compound source
Molecule: 4-Hydroxyphenylpyruvate Dioxygenase
Chain: A
Synonym: 4hppd, Hpd, Hppdase
Ec: 1.13.11.27
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.400 83.700 63.300 90.00 102.40 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 869, FE enzyme Oxidoreductase E.C.1.13.11.27 BRENDA
related structures by homologous chain: 1SQD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases., Yang C, Pflugrath JW, Camper DL, Foster ML, Pernich DJ, Walsh TA, Biochemistry 2004 Aug 17;43(32):10414-23. PMID:15301540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1tfz.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 1TFZ
  • CSU: Contacts of Structural Units for 1TFZ
  • Likely Quarternary Molecular Structure file(s) for 1TFZ
  • Retrieve 1TFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TFZ from S2C, [Save to disk]
  • View 1TFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TFZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TFZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tfza1, region A:15-180 [Jmol] [rasmolscript] [script source]
        - Domain d1tfza2, region A:181-408 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tfz_A] [1tfz]
  • SWISS-PROT database: [P93836]
  • Domain organization of [HPPD_ARATH] by SWISSPFAM
  • Other resources with information on 1TFZ
  • Community annotation for 1TFZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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