1THG Hydrolase(Carboxylic Esterase) date Jul 28, 1992
title 1.8 Angstroms Refined Structure Of The Lipase From Geotrichu
authors J.D.Schrag, M.Cygler
compound source
Molecule: Lipase 2
Chain: A
Synonym: Gcl II, Lipase II
Ec: 3.1.1.3
Engineered: Yes
 Organism_scientific: Geotrichum Candidum
Organism_common: Oospora Lactis
Organism_taxid: 1173061
Strain: Atcc 34614
Gene: Lip2
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.400 84.000 56.000 90.00 100.10 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NAG, NDG, PCA enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1.8 A refined structure of the lipase from Geotrichum candidum., Schrag JD, Cygler M, J Mol Biol 1993 Mar 20;230(2):575-91. PMID:8464065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1thg.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1THG
  • CSU: Contacts of Structural Units for 1THG
  • Likely Quarternary Molecular Structure file(s) for 1THG
  • Structure Factors (232 Kb)
  • Retrieve 1THG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1THG from S2C, [Save to disk]
  • Re-refined 1thg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1THG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1THG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1THG, from MSDmotif at EBI
  • Genome occurence of 1THG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1thg__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1thg_A] [1thg]
  • SWISS-PROT database: [P79066] [P22394]
  • Domain organization of [LIP1_GEOFE] [LIP2_GEOCN] by SWISSPFAM
    • Other resources with information on 1THG
  • Community annotation for 1THG at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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