1THL Hydrolase Hydrolase Inhibitor date Nov 17, 1993
title Thermolysin Complexed With A Novel Glutaramide Derivative, N S)-Carboxy-4-Phenylbutyl) Cyclopentylcarbonyl)-(S)-Tryptoph
authors D.R.Holland, B.W.Matthews
compound source
Molecule: Thermolysin
Chain: A
Ec: 3.4.24.27
 Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.162 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.100 94.100 131.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 0DB, CA, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
related structures by homologous chain: 1KS7, 1LNE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of thermolysin and neutral endopeptidase 24.11 by a novel glutaramide derivative: X-ray structure determination of the thermolysin-inhibitor complex., Holland DR, Barclay PL, Danilewicz JC, Matthews BW, James K, Biochemistry 1994 Jan 11;33(1):51-6. PMID:8286362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1thl.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1THL
  • CSU: Contacts of Structural Units for 1THL
  • Likely Quarternary Molecular Structure file(s) for 1THL
  • Structure Factors (296 Kb)
  • Retrieve 1THL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1THL from S2C, [Save to disk]
  • Re-refined 1thl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1THL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1THL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1THL, from MSDmotif at EBI
  • Genome occurence of 1THL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1thl__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1thl] [1thl_A]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
    • Other resources with information on 1THL
  • Community annotation for 1THL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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