1TIK Hydrolase date Jun 02, 2004
title Crystal Structure Of Acyl Carrier Protein Phosphodiesterase
authors K.R.Rajashankar, R.Kniewel, V.Solorzano, C.D.Lima, S.K.Burley, Ne Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Acyl Carrier Protein Phosphodiesterase
Chain: A
Synonym: Acp Phosphodiesterase
Ec: 3.1.4.14
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Acpd, B1412
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet T7
symmetry Space Group: P 4 21 2
R_factor 0.186 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.371 94.371 54.605 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.1.4.14 BRENDA
related structures by homologous chain: 1V4B
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1tik.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1TIK
  • CSU: Contacts of Structural Units for 1TIK
  • Likely Quarternary Molecular Structure file(s) for 1TIK
  • Structure Factors (278 Kb)
  • Retrieve 1TIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TIK from S2C, [Save to disk]
  • Re-refined 1tik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TIK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tika_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tik_A] [1tik]
  • SWISS-PROT database: [P41407]
  • Domain organization of [AZOR_ECOLI] by SWISSPFAM
  • Other resources with information on 1TIK
  • Community annotation for 1TIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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