1TJL	Transcription	date	Jun 06, 2004
title	Crystal Structure Of Transcription Factor Dksa From E. Coli
authors	A.Perederina, V.Svetlov, M.N.Vassylyeva, I.Artsimovitch, S.Yokoy D.G.Vassylyev, Riken Structural Genomicsproteomics Initiati
compound		source
Molecule: Dnak Suppressor Protein Chain: A, B, C, D, E, F, G, H, I, J Synonym: Dksa, Transcription Factor Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Dksa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvs11
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.319 96.593 117.477 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription., Perederina A, Svetlov V, Vassylyeva MN, Tahirov TH, Yokoyama S, Artsimovitch I, Vassylyev DG, Cell 2004 Aug 6;118(3):297-309. PMID:15294156

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk] Biological Unit Coordinates (1tjl.pdb1.gz) 28 Kb Biological Unit Coordinates (1tjl.pdb2.gz) 28 Kb Biological Unit Coordinates (1tjl.pdb3.gz) 27 Kb Biological Unit Coordinates (1tjl.pdb4.gz) 28 Kb Biological Unit Coordinates (1tjl.pdb5.gz) 27 Kb Biological Unit Coordinates (1tjl.pdb6.gz) 28 Kb Biological Unit Coordinates (1tjl.pdb7.gz) 28 Kb Biological Unit Coordinates (1tjl.pdb8.gz) 27 Kb Biological Unit Coordinates (1tjl.pdb9.gz) 27 Kb LPC: Ligand-Protein Contacts for 1TJL CSU: Contacts of Structural Units for 1TJL Likely Quarternary Molecular Structure file(s) for 1TJL Structure Factors (1104 Kb) Retrieve 1TJL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TJL from S2C, [Save to disk] Re-refined 1tjl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TJL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TJL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TJL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tjla2, region A:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjla1, region A:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlb2, region B:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlb1, region B:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlc2, region C:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlc1, region C:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjld2, region D:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjld1, region D:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjle2, region E:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjle1, region E:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlf2, region F:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlf1, region F:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlg2, region G:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlg1, region G:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlh2, region H:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlh1, region H:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjli2, region I:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjli1, region I:7-110 [Jmol] [rasmolscript] [script source]     - Domain d1tjlj2, region J:111-151 [Jmol] [rasmolscript] [script source]     - Domain d1tjlj1, region J:7-110 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tjl_E] [1tjl_H] [1tjl_F] [1tjl_D] [1tjl_A] [1tjl_C] [1tjl_G] [1tjl_J] [1tjl] [1tjl_B] [1tjl_I] SWISS-PROT database: [P0ABS1] Domain organization of [DKSA_ECOLI] by SWISSPFAM

Other resources with information on 1TJL

Community annotation for 1TJL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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