1TLH Transcription date Jun 09, 2004
title T4 Asia Bound To Sigma70 Region 4
authors L.J.Lambert, Y.Wei, V.Schirf, B.Demeler, M.H.Werner
compound source
Molecule: 10 Kda Anti-Sigma Factor
Chain: A
Synonym: Audrey Stevens' Inhibitor, 10 Kda Rna Polymerase-A Protein;
Engineered: Yes
Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Gene: Asia
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Si
Expression_system_plasmid: Pet-28b

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: B
Synonym: Sigma-70
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpod, Alt, B3067
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-28b
methodSolution NMR
related structures by homologous chain: 1JR5, 1KU3, 1TL6, 1TTY
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceT4 AsiA blocks DNA recognition by remodeling sigma(70) region 4., Lambert LJ, Wei Y, Schirf V, Demeler B, Werner MH, EMBO J 2004 Aug 4;23(15):2952-62. Epub 2004 Jul 15. PMID:15257291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (873 Kb) [Save to disk]
  • Biological Unit Coordinates (1tlh.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1TLH
  • Retrieve 1TLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TLH from S2C, [Save to disk]
  • View 1TLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TLH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TLH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tlha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tlhb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tlh_B] [1tlh_A] [1tlh]
  • SWISS-PROT database: [P32267] [P00579]
  • Domain organization of [ASIA_BPT4] [RPOD_ECOLI] by SWISSPFAM
  • Other resources with information on 1TLH
  • Community annotation for 1TLH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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