1TLP	Hydrolase Hydrolase Inhibitor	date	Jun 29, 1987
title	Crystallographic Structural Analysis Of Phosphoramidates As And Transition-State Analogs Of Thermolysin
authors	D.E.Tronrud, A.F.Monzingo, B.W.Matthews
compound		source
Molecule: Thermolysin Chain: E Ec: 3.4.24.27 Engineered: Yes		Organism_scientific: Bacillus Thermoproteolyticus Organism_taxid: 1427
symmetry	Space Group: P 61 2 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.100 94.100 131.400 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, RDF, RHA, ZN	enzyme	Hydrolase E.C.3.4.24.27 BRENDA
related structures	by homologous chain: 5TLN, 7TLN
Primary reference	Crystallographic structural analysis of phosphoramidates as inhibitors and transition-state analogs of thermolysin., Tronrud DE, Monzingo AF, Matthews BW, Eur J Biochem 1986 Jun 2;157(2):261-8. PMID:3709536

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1tlp.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 1TLP CSU: Contacts of Structural Units for 1TLP Likely Quarternary Molecular Structure file(s) for 1TLP Structure Factors (69 Kb) Retrieve 1TLP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TLP from S2C, [Save to disk] Re-refined 1tlp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TLP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1TLP

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1TLP, from MSDmotif at EBI Genome occurence of 1TLP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tlpe_, region E [Jmol] [rasmolscript] [script source] Fold representative 1tlp from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tlp_E] [1tlp_I] SWISS-PROT database: [P00800] Domain organization of [THER_BACTH] by SWISSPFAM Alignments of the sequence of 1TLP with the sequences similar proteins can be viewed for 1TLP's classification [THER_BACTH] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [THER_BACTH] at ProtoMap. Click on the Cluster number.

Other resources with information on 1TLP

Community annotation for 1TLP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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