1TOB Rna date Dec 12, 1996
title Saccharide-Rna Recognition In An Aminoglycoside Antibiotic-R Complex, Nmr, 7 Structures
authors L.Jiang, A.K.Suri, R.Fiala, D.J.Patel
compound source
Molecule: Rna (5'-R(Ggcacgagguuuagcuacacucgugcc)-3')
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
ligand TOA, TOB, TOC enzyme
Primary referenceSaccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex., Jiang L, Suri AK, Fiala R, Patel DJ, Chem Biol 1997 Jan;4(1):35-50. PMID:9070426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1tob.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1TOB
  • CSU: Contacts of Structural Units for 1TOB
  • Original NMR restraints for 1TOB from PDB
  • Retrieve 1TOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TOB from S2C, [Save to disk]
  • View 1TOB in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TOB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TOB, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tob] [1tob_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1TOB
  • Community annotation for 1TOB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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