1TOZ Signaling Protein date Jun 15, 2004
title Nmr Structure Of The Human Notch-1 Ligand Binding Region
authors S.Hambleton, N.Y.Valeyev, A.Muranyi, V.Knott, J.M.Werner, A.J.Mcm P.A.Handford, A.K.Downing
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: A
Fragment: Notch-1 Egf 11-13
Synonym: Notch 1, Hn1, Translocation-Associated Notch Prote
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional properties of the human notch-1 ligand binding region., Hambleton S, Valeyev NV, Muranyi A, Knott V, Werner JM, McMichael AJ, Handford PA, Downing AK, Structure (Camb) 2004 Dec;12(12):2173-83. PMID:15576031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • Biological Unit Coordinates (1toz.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1TOZ
  • Original NMR restraints for 1TOZ from PDB
  • Retrieve 1TOZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TOZ from S2C, [Save to disk]
    • View 1TOZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TOZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TOZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1toza1, region A:411-452 [Jmol] [rasmolscript] [script source]
        - Domain d1toza2, region A:453-491 [Jmol] [rasmolscript] [script source]
        - Domain d1toza3, region A:492-526 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1toz_A] [1toz]
  • SWISS-PROT database: [P46531]
  • Belongs to the selenoprotein p receptor (selp-receptor) family according to TCDB.
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 1TOZ: [EGF_CA ] by SMART
    • Other resources with information on 1TOZ
  • Community annotation for 1TOZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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