1TQM Ribosome date Jun 17, 2004
title Crystal Structure Of A. Fulgidus Rio2 Serine Protein Kinase Amppnp
authors N.Laronde-Leblanc, A.Wlodawer
compound source
Molecule: Conserved Hypothetical Protein
Chain: A
Synonym: Rio2
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 224325
Strain: Dsm 4304
Gene: Rio2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.165 44.259 62.097 90.00 94.38 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand ANP enzyme
related structures by homologous chain: 1TQI, 1ZAO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of A. fulgidus Rio2 Defines a New Family of Serine Protein Kinases., LaRonde-LeBlanc N, Wlodawer A, Structure (Camb) 2004 Sep;12(9):1585-94. PMID:15341724
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1tqm.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1TQM
  • CSU: Contacts of Structural Units for 1TQM
  • Likely Quarternary Molecular Structure file(s) for 1TQM
  • Structure Factors (319 Kb)
  • Retrieve 1TQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TQM from S2C, [Save to disk]
  • Re-refined 1tqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TQM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TQM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tqma1, region A:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1tqma2, region A:91-282 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tqm_A] [1tqm]
  • SWISS-PROT database: [O30245]
  • Domain organization of [RIO2_ARCFU] by SWISSPFAM
  • Domain found in 1TQM: [RIO ] by SMART
  • Other resources with information on 1TQM
  • Community annotation for 1TQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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