1TU5 Oxidoreductase date Jun 24, 2004
title Crystal Structure Of Bovine Plasma Copper-Containing Amine O
authors M.Lunelli, M.L.Di Paolo, M.Biadene, V.Calderone, M.Scarpa, R.Batt A.Rigo, G.Zanotti
compound source
Molecule: Copper Amine Oxidase, Liver Isozyme
Chain: A, B
Synonym: Amine Oxidase [Copper-Containing], Serum Amine Oxi
Ec: 1.4.3.6
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Plasma
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.680 131.192 134.001 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand CA, CL, CU, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1HXD, 1US1, 1WXD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of amine oxidase from bovine serum., Lunelli M, Di Paolo ML, Biadene M, Calderone V, Battistutta R, Scarpa M, Rigo A, Zanotti G, J Mol Biol. 2005 Mar 4;346(4):991-1004. Epub 2005 Jan 25. PMID:15701511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (1tu5.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 1TU5
  • CSU: Contacts of Structural Units for 1TU5
  • Likely Quarternary Molecular Structure file(s) for 1TU5
  • Structure Factors (403 Kb)
  • Retrieve 1TU5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TU5 from S2C, [Save to disk]
  • Re-refined 1tu5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TU5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TU5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TU5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tu5] [1tu5_B] [1tu5_A]
  • SWISS-PROT database: [Q29437]
  • Domain organization of [AOCX_BOVIN] by SWISSPFAM
  • Other resources with information on 1TU5
  • Community annotation for 1TU5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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