1TV0 Antimicrobial Protein date Jun 25, 2004
title Solution Structure Of Cryptdin-4, The Most Potent Alpha-Defe Mouse Paneth Cells
authors W.Jing, H.N.Hunter, H.Tanabe, A.J.Ouellette, H.J.Vogel
compound source
Molecule: Cryptdin-4
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Defcr4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)-Codon-Plus-Ril
Expression_system_vector: Pet-28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structure of Cryptdin-4, a Mouse Paneth Cell alpha-Defensin(,)., Jing W, Hunter HN, Tanabe H, Ouellette AJ, Vogel HJ, Biochemistry 2004 Dec 21;43(50):15759-15766. PMID:15595831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (1tv0.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1TV0
  • Original NMR restraints for 1TV0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TV0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TV0 from S2C, [Save to disk]
    • View 1TV0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TV0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TV0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tv0a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tv0_A] [1tv0]
  • SWISS-PROT database: [P28311]
  • Belongs to the defensin (defensin) family according to TCDB.
  • Domain organization of [DEF4_MOUSE] by SWISSPFAM
  • Domain found in 1TV0: [DEFSN ] by SMART
    • Other resources with information on 1TV0
  • Community annotation for 1TV0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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