1TV6	Transferase	date	Jun 28, 2004
title	Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
authors	J.D.Pata, W.G.Stirtan, S.W.Goldstein, T.A.Steitz
compound		source
Molecule: Reverse Transcriptase P66 Subunit Chain: A Ec: 2.7.7.4 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Bh Organism_taxid: 11678 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkrt
Molecule: Reverse Transcriptase P51 Subunit Chain: B Ec: 2.7.7.4 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Bh Organism_taxid: 11678 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkrt
symmetry	Space Group: C 1 2 1	R_factor 0.262 R_Free 0.312
crystal cell	length a length b length c angle alpha angle beta angle gamma 223.910 69.040 104.330 90.00 106.64 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	CP9	enzyme	Transferase E.C.2.7.7.4 BRENDA
related structures	by homologous chain: 1JLE, 2HMI
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of HIV-1 reverse transcriptase bound to an inhibitor active against mutant reverse transcriptases resistant to other nonnucleoside inhibitors., Pata JD, Stirtan WG, Goldstein SW, Steitz TA, Proc Natl Acad Sci U S A 2004 Jul 20;101(29):10548-53. Epub 2004 Jul 12. PMID:15249669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (1tv6.pdb1.gz) 156 Kb LPC: Ligand-Protein Contacts for 1TV6 CSU: Contacts of Structural Units for 1TV6 Likely Quarternary Molecular Structure file(s) for 1TV6 Structure Factors (322 Kb) Retrieve 1TV6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TV6 from S2C, [Save to disk] Re-refined 1tv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TV6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TV6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TV6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tv6a2, region A:1-429 [Jmol] [rasmolscript] [script source]     - Domain d1tv6a1, region A:430-539 [Jmol] [rasmolscript] [script source]     - Domain d1tv6b1, region B:6-428 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tv6_A] [1tv6] [1tv6_B] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM

Other resources with information on 1TV6

Community annotation for 1TV6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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