1TX8 Hydrolase date Jul 02, 2004
title Bovine Trypsin Complexed With Amso
authors A.D.Mesecar
compound source
Molecule: Trypsinogen
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.795 58.580 67.563 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand AM4, CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, synthesis, and evaluation of oxyanion-hole selective inhibitor substituents for the S1 subsite of factor Xa., Rumthao S, Lee O, Sheng Q, Fu W, Mulhearn DC, Crich D, Mesecar AD, Johnson ME, Bioorg Med Chem Lett 2004 Oct 18;14(20):5165-70. PMID:15380220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1tx8.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1TX8
  • CSU: Contacts of Structural Units for 1TX8
  • Likely Quarternary Molecular Structure file(s) for 1TX8
  • Structure Factors (193 Kb)
  • Retrieve 1TX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TX8 from S2C, [Save to disk]
  • Re-refined 1tx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TX8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TX8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tx8_A] [1tx8]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1TX8: [Tryp_SPc ] by SMART
  • Other resources with information on 1TX8
  • Community annotation for 1TX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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