1TYF	Peptidase	date	Oct 13, 1997
title	The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Atp-Dependent Proteolysis
authors	J.Wang, J.A.Hartling, J.M.Flanagan
compound		source
Molecule: Clp Peptidase Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N Synonym: Clpp Ec: 3.4.21.92 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.219 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 193.320 102.460 157.080 90.00 97.80 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand		enzyme	Hydrolase E.C.3.4.21.92 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, N, K, E, B, H, M, C, D, I, G, L
Primary reference	The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis., Wang J, Hartling JA, Flanagan JM, Cell 1997 Nov 14;91(4):447-56. PMID:9390554

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk] Biological Unit Coordinates (1tyf.pdb1.gz) 418 Kb CSU: Contacts of Structural Units for 1TYF Likely Quarternary Molecular Structure file(s) for 1TYF Structure Factors (1093 Kb) Retrieve 1TYF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TYF from S2C, [Save to disk] Re-refined 1tyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TYF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TYF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TYF, from MSDmotif at EBI Genome occurence of 1TYF's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tyfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1tyfb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1tyfc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1tyfd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1tyfe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1tyff_, region F [Jmol] [rasmolscript] [script source]     - Domain d1tyfg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1tyfh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1tyfi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1tyfj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1tyfk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1tyfl_, region L [Jmol] [rasmolscript] [script source]     - Domain d1tyfm_, region M [Jmol] [rasmolscript] [script source]     - Domain d1tyfn_, region N [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tyf_N] [1tyf_E] [1tyf_M] [1tyf_K] [1tyf_L] [1tyf_J] [1tyf_I] [1tyf] [1tyf_G] [1tyf_B] [1tyf_A] [1tyf_F] [1tyf_H] [1tyf_C] [1tyf_D] SWISS-PROT database: [P0A6G7] Domain organization of [CLPP_ECOLI] by SWISSPFAM

Other resources with information on 1TYF

Community annotation for 1TYF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---