1TZH	Immune System	date	Jul 09, 2004
title	Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
authors	F.A.Fellouse, C.Wiesmann, S.S.Sidhu
compound		source
Molecule: Vascular Endothelial Growth Factor A Chain: V, W Synonym: Vegf-A, Vascular Permeability Factor, Vpf, H-Vegf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vegf, Vegfa Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fab Yads1 Light Chain Chain: A, L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 16c9 Expression_system_vector_type: Plasmid Expression_system_plasmid: F
Molecule: Fab Yads1 Heavy Chain Chain: B, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 16c9 Expression_system_vector_type: Plasmid Expression_system_plasmid: F
symmetry	Space Group: P 1 21 1	R_factor 0.212 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.269 76.269 112.497 90.00 105.77 90.00
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1H3P, 1MKG, 1QTY, 1U8L
Gene Ontology	Chain Function Process Component W, V
Primary reference	Synthetic antibodies from a four-amino-acid code: A dominant role for tyrosine in antigen recognition., Fellouse FA, Wiesmann C, Sidhu SS, Proc Natl Acad Sci U S A 2004 Aug 24;101(34):12467-72. Epub 2004 Aug 11. PMID:15306681

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (1tzh.pdb1.gz) 161 Kb CSU: Contacts of Structural Units for 1TZH Likely Quarternary Molecular Structure file(s) for 1TZH Structure Factors (308 Kb) Retrieve 1TZH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TZH from S2C, [Save to disk] Re-refined 1tzh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TZH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TZH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TZH, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tzha1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1tzha2, region A:108-211 [Jmol] [rasmolscript] [script source]     - Domain d1tzhb1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1tzhb2, region B:114-213 [Jmol] [rasmolscript] [script source]     - Domain d1tzhh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1tzhh2, region H:114-213 [Jmol] [rasmolscript] [script source]     - Domain d1tzhl1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1tzhl2, region L:108-211 [Jmol] [rasmolscript] [script source]     - Domain d1tzhv_, region V [Jmol] [rasmolscript] [script source]     - Domain d1tzhw_, region W [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tzh_H] [1tzh] [1tzh_B] [1tzh_W] [1tzh_L] [1tzh_A] [1tzh_V] SWISS-PROT database: [P15692] Domain organization of [VEGFA_HUMAN] by SWISSPFAM Domains found in 1TZH: [IG_like] [IGv] [PDGF ] by SMART

Other resources with information on 1TZH

Community annotation for 1TZH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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