1U27 Lipid Binding Protein date Jul 16, 2004
title Triglycine Variant Of The Arno Pleckstrin Homology Domain In With Ins(1,3,4,5)P4
authors T.C.Cronin, J.P.Dinitto, M.P.Czech, D.G.Lambright
compound source
Molecule: Cytohesin 2
Chain: A
Synonym: Arf Nucleotide-Binding Site Opener, Arno Protein, Homolog B, Msec7-2;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Pscd2, Sec7b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.917 56.024 59.533 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 4IP enzyme
related structures by homologous chain: 1FGZ, 1FHX
Primary referenceStructural determinants of phosphoinositide selectivity in splice variants of Grp1 family PH domains., Cronin TC, DiNitto JP, Czech MP, Lambright DG, EMBO J 2004 Sep 29;23(19):3711-20. Epub 2004 Sep 09. PMID:15359279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1u27.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1U27
  • CSU: Contacts of Structural Units for 1U27
  • Likely Quarternary Molecular Structure file(s) for 1U27
  • Structure Factors (108 Kb)
  • Retrieve 1U27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U27 from S2C, [Save to disk]
  • Re-refined 1u27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U27
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U27, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u27_A] [1u27]
  • SWISS-PROT database: [P63034]
  • Domain organization of [CYH2_MOUSE] by SWISSPFAM
  • Domain found in 1U27: [PH ] by SMART
    • Other resources with information on 1U27
  • Community annotation for 1U27 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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